CIBC Workshop 2008

December 4-5  /  University of Utah

Organizers: Chris Johnson, Rob MacLeod, and Ross Whitaker

Summary

The NIH/NCRR Center for Integrative Biomedical Computing (CIBC) is pleased to offer a workshop for scientists and engineers interested in learning how to use the CIBC software. The goal of the workshop will be to describe both the problem solving environment, SCIRun, and some of the related "power apps", programs developed by the CIBC for specific high-impact biomedical applications. We especially encourage students, post docs, and staff-the actual users of our software-to attend the workshop. We also invite participants to bring their own data and their laptop computers so as to provide relevant, real world examples. CIBC staff and developers will be on hand to help participants learn the programs, port their data, and generate useful results.

25 Attendees

Presentations

Day 1

1.1 Welcome to SCI (Rob MacLeod)

1.2 Strategies for Effective Segmentation [PPT ] (Ross Whitaker)

1.3 Segmentation using Seg3D (Josh Blauer)

1.4 Lab1: Seg3D Tutorial (Jeroen Stinstra, Josh Blauer, Allen Sanderson)

1.5 Case Study: Development of and Electrical Stimulation Device for Osseointegrated Amputee (Brad Isaacson)

1.6 ImageVis3D and Scientific Visualization [PPT ] (Jens Krüger)

1.7 Lab2: ImageVis3D Tutorial (Jens Krüger, Tom Fogal)

1.8 Demo: map3d

1.9 Installing/Downloading SCI Software (Ayla Khan)

Day 2

2.1 General Introduction into SCIRun and Scientific Computing Part 1 (Dave Weinstein)

2.2 Lab 3: SCIRun Basics Visualization Part 1 (Ayla Khan, Dave Weinstein, Jeroen Stinstra, Tom Fogal, Allen Sanderson)
2.3 General Introduction into SCIRun and Scientific Computing Part 2 (Dave Weinstein)

2.4 Lab 3: SCIRun Basics Visualization Part 2 (Ayla Khan, Dave Weinstein, Jeroen Stinstra, Tom Fogal, Allen Sanderson)

2.5 Case Study: Current challenges in Pediatric Defibrillation (Matt Jolley)

2.6 Introduction into Meshing and Simulation using SCIRun (Jeroen Stinstra)

2.7 Lab 4: SCIRun Simulation (Jeroen Stinstra, Ayla Khan, Darrell Swenson, Tom Fogal, Allen Sanderson)